Below is a list of scientific publications where MICE Toolkit has been used. Feel free to contact us via the contact form if your publication is missing.


Deep learning-based classification and structure name standardization for organ at risk and target delineations in prostate cancer radiotherapy

Journal of applied clinical medical physics. Christian Jamtheim Gustafsson, Michael Lempart, Johan Swärd, Emilia Persson, Tufve Nyholm, Camilla Thellenberg Karlsson, Jonas Scherman. 2021

Investigation of the clinical inter-observer bias in prostate fiducial marker image registration between CT and MR images

Radiation Oncology 16, art. 150. Emilia Persson, Sevgi Emin, Jonas Scherman, Christian Jamtheim Gustafsson, Patrik Brynolfsson, Sofie Ceberg, Adalsteinn Gunnlaugsson, Lars E. Olsson. 2021

Intrafractional motion models based on principal components in Magnetic Resonance guided prostate radiotherapy

Physics and Imaging in Radiation Oncology, 20:17-22. Samuel Fransson, David Tilly, Anders Ahnesjö, Tufve Nyholm, Robin Strand. 2021

Additional Value of 18F-FDOPA Amino Acid Analog Radiotracer to Irradiation Planning Process of Patients With Glioblastoma Multiforme

Front. Oncology: 699360. Sipos David, Zoltan László, Zoltan Tóth, Peter Kovács, Jozsef Tollár, Akos Gulybán, Ferenc Lakosi, Imre Repa, Arpad Kovács. 2021

Evaluation of Clinician Contouring for Pancreatic Stereotactic Ablative Radiotherapy During a Contouring Workshop Organised by the Royal College of Radiologists

Clinical Oncology, 33, 3: E196-197. Slevin F, M Beasley, R Speight, J Lilley, L Murray, M Hawkins, G Radhakrishna, A Henry. 2021

Evaluation of irregular breathing effects on internal target volume definition for lung cancer radiotherapy

Medical Physics, 48, 5: 2136-2144. Wikström Kenneth A, Ulf M. Isacsson, Marta C. Pinto, Kristina M. Nilsson. 2021

Changing the Contrast of Magnetic Resonance Imaging Signals using Deep Learning

MIDL Open Review. Simko Attila, Tommy Löfstedt, Anders Garpebring, Mikael Bylund, Tufve Nyholm, Joakim Jonsson. 2021

Multidimensional Diffusion Magnetic Resonance Imaging for Characterization of Tissue Microstructure in Breast Cancer Patients: A Prospective Pilot Study

Cancers, 13, 7: 1606. Naranjo Isaac Daimiel, Alexis Reymbaut, Patrik Brynolfsson, Roberto Lo Gullo, Karin Bryskhe, Daniel Topgaard, Dilip D. Giri, Jeffrey S Reiner, Sunita B. Thakur, Katja Pinker-Domenig. 2021

Adaptive sequential plan-on-plan optimization during prostate-specific antigen response guided radiotherapy of recurrent prostate cancer

Physics and Imaging in Radiation Oncology, 18: 5-10. Jóhannesson Vilberg, Elinore Wieslander, Per Nilsson, Eva Brun, Ulrika Bitzén, Göran Ahlgren, Tomas Olsson, Sven Bäck, Elisabeth Kjellén, Adalsteinn Gunnlaugsson. 2021

Clinical validation of a commercially available deep learning software for synthetic CT generation for brain

Radiation Oncology, 16, 66. Lerner Minna, Joakim Medin, Christian Jamtheim Gustafsson, Sara Alkner, Carl Siversson, Lars E. Olsson. 2021

Improving generalization in MR‐to‐CT synthesis in radiotherapy by using an augmented cycle generative adversarial network with unpaired data

The International Journal of Medical Physics Research and Practice, accepted and published online. Brou Boni Kévin N D, John Klein, Akos Gulyban, Nick Reynaert, David Pasquier. 2021

Registration of histopathology to magnetic resonance imaging of prostate cancer

Physics and Imaging in Radiation Oncology, 18: 19-25. Sandgren Kristina, Erik Nilsson, Angsana Keeratijarut Lindberg, Sara Strandberg, Lennart Blomqvist, Anders Bergh, Bengt Friedrich, Jan Axelsson, Margareta Ögren, Mattias Ögren, Anders Widmark, Camilla Thellenberg Karlsson, Karin Söderkvist, Katrine Riklund, Joakim Jonsson, Tufve Nyholm. 2021

Impact of neoadjuvant androgen deprivation therapy on magnetic resonance imaging features in prostate cancer before radiotherapy

Physics and Imaging in Radiation Oncology, 17: 117-123. Björeland Ulrika, Tufve Nyholm, Joakim Jonsson, Mikael Skorpil, Lennart Blomqvist, Sara Strandberg, Katrine Riklund, Lars Beckman, Camilla Thellenberg-Karlsson. 2021

Evaluating the image quality of combined positron emission tomography-magnetic resonance images acquired in the pelvic radiotherapy position

Physics in Medicine & Biology, 66, 3. Wyatt Jonathan J, Elizabeth Howell, Maelene Lohezic, Hazel M McCallum, Ross J Maxwell. 2021

An MR-only acquisition and artificial intelligence based image-processing protocol for photon and proton therapy using a low field MR

Zeitschrift für Medizinische Physik, 31: 78-88. Zimmermann Lukas, Martin Buschmann, Harald Herrmann, Gerd Heidemann, Peter Küess, Gregor Goldner, Tufve Nyholm, Dietmar Georg, Nicole Nesvacil. 2021.

Cone beam computed tomography for dose calculation quality assurance for magnetic resonance-only radiotherapy

Physics and Imaging in Radiation Oncology, 17: 71-76. Wyatt Jonathan J, Rachel A. Pearson, Cristopher P. Walker, Rachel L. Brooks, Karen Pilling, Hazel M. McCallum. 2021.


Combined quality and dose-volume histograms for assessing the predictive value of 99mTc-MAA SPECT/CT simulation for personalizing radioembolization treatment in liver metastatic colorectal cancer

EJNMMI Physics, 7:75. Levillain Hugo, Manuela Burghelea, Ivan Duran Derijckere, Thomas Guiot, Akos Gulyban, Bruno Vanderlinden, Michael Vouche, Patrick Flamen, Nick Reynaert.

Erectile Dysfunction and Absorbed Dose to
Penile Base Structures in a Randomized Trial
Comparing Ultrahypofractionated and
Conventionally Fractionated Radiation Therapy
for Prostate Cancer

International Journal of Radiation Oncology, Biology, Physics.107, 1: 143-151. Rasmusson Elisabeth, Adalsteinn Gunnlaugsson, Elinore Wieslander, Peter Höglund, Anders Widmark, Per Fransson, Elisabeth Kjellén, Per Nilsson. 2020.

Sensitivity analysis of different quality assurance methods for magnetic resonance imaging in radiotherapy

Physics and imaging in Radiation Oncology 13: 21-27. Adjeiwaah, Mary, Anders Garpebring, Tufve Nyholm. 2020.

Latent Space Manipulation for High-Resolution Medical Image Synthesis via the StyleGAN

Medical Physics Volume 30, issue 4 2020. Fetty, L. Mikael Bylund, Peter Kuess, Gerd Heilemann, Tufve Nyholm, Dietmar Georg, Tommy Löfstedt. 2020

Investigating Conditional GAN performance with different generator architectures, an ensemble model, and different MR Scanners for MR-sCT conversion

Physics in Medicine Biology, Volume 65, Number 10. Fetty, L. Tommy Löfstedt, Gerd Heilemann, Hugo Furtado, Nicole Nesvascil, Tufve Nyholm, Dietmarg Georg, Peter Kuess. 2020.

Spatial Distribution of Noise Reduction in Four Iterative Reconstruction Algorithms in CT – A Technical Evaluation

Diagnostics 2020, 10, 647. Guleng, A. Kirsten Bolstad, Ingvild Dalehaug, Silje Flataboe, Daniel Aadnevik, Helge E. S. Pettersen. 2020.

Comparison of CBCT conversion methods for dose calculation in the head and neck region

Medical Physics un 30:S0939-3889(20)30059-3. Irmak, S, Dietmar Georg, Wolfgang Lechner. 2020.

No increased Cardiac Mortality or Morbidity of Radiation Therapy in Breast Cancer Patients After Breast-Conserving Surgery: 20-year Follow-up of the Randomized SweBCGRT Trial

International Journal of Radiation Oncology*Biology*Physics, Volume 107, Issue 4: 701-709. Killander, F, Elinore Wieslander, Per Karlsson, Erik Holmberg, Dan Lundstedt, Lars Holmberg, Linda Werner, Sasha Koul, Mahnaz Haghanegi, Elisabeth Kjellen, Per Nilsson, Per Malmström. 2020.

Bayesian non-linear regression with spatial priors for noise reduction and error estimation in quantitative MRI with an application in T1 estimation

Physics in Medicine and Biology (in press). Löfstedt, T. Max Hellström, Mikael Bylund, Anders Garpebring. 2020.

Dosimetric effects of adaptive prostate cancer radiotherapy in an MR-linac Workflow

Radiation Oncology 15. Mannerberg, A, Emilia Persson, Joakim Jonsson, Christian Jamtheim Gustafsson, Adalsteinn Gunnlaugsson, Lars E. Olsson & Sophie Ceberg. 2020.

MR-PROTECT: Clinical feasibility of a prostate MRI-only radiotherapy treatment workflow and investigation of acceptance criteria

Radiation Oncology 15: 1-13. Persson, E, Christian Jamtheim Gustafsson, Petra Ambolt, Silke Engelholm, Sophie Ceberg, Sven Bäck, Lars E. Olsson, Adalsteinn Gunnlagusson. 2020.


Dosimetric Impact of MRI Distortions: A Study on Head and Neck Cancers

International Journal of Radiation Oncology*Biology*Physics 103 (4): 994–1003. Adjeiwaah, Mary, Mikael Bylund, Josef A. Lundman, Karin Söderström, Björn Zackrisson, Joakim H. Jonsson, Anders Garpebring, and Tufve Nyholm. 2019.

Impact of Androgen Deprivation Therapy on Apparent Diffusion Coefficient and T2w MRI for Histogram and Texture Analysis with Respect to Focal Radiotherapy of Prostate Cancer.

Strahlentherapie Und Onkologie 195 (5): 402–11. Daniel, M., P. Kuess, P. Andrzejewski, T. Nyholm, T. Helbich, S. Polanec, F. Dragschitz, G. Goldner, D. Georg, and P. Baltzer. 2019.

Pilot Study: Textural features of mpMRI for response assessment in prostate cancer patients

2 Radiotherapy and Oncology 133: 1113. Daniel, M. Kuess, P. Andzejewski, P. Nyholm, T. 2019.

Breathing-Motion Induced Interplay Effects for Stereotactic Body Radiotherapy of Liver Tumours Using Flattening-Filter Free Volumetric Modulated Arc Therapy

Physics in Medicine & Biology 64 (2): 025006. Edvardsson, A, J Scherman, M P Nilsson, B Wennberg, F Nordström, C Ceberg, and S Ceberg. 2019.

Evaluating Different Generator Networks of a Conditional Generative Adversarial Network

Radiotherapy and Oncology, 133: S555-S555. Fetty, Lukas. 2019.

Gray-level Invariant Haralick texture features

PLoS ONE 14(2): e0212110. Löfstedt, T. Patrik Brynolfsson, Thomas Asklund, Tufve Nyholm, Anders Garpebring. 2019.

Dual Energy CT as a Foundation for Proton Therapy Treatment Planning-A Pilot Study.

Näsmark, Torbjörn. 2019.

Radiation Dosimetry of [68Ga]PSMA-11 in Low-Risk Prostate Cancer Patients.

EJNMMI Physics 6 (1): 2. Sandgren, Kristina, Lennart Johansson, Jan Axelsson, Joakim Jonsson, Mattias Ögren, Margareta Ögren, Martin Andersson, et al. 2019.

Applying a Commercial Atlas-Based Synthetic Computed Tomography Algorithm to Patients with Hip Prostheses for Prostate Magnetic Resonance-Only Radiotherapy

Radiotherapy and Oncology 133 (April): 100–105. Wyatt, Jonathan, and Hazel McCallum. 2019.


Quantifying the Effect of 3T Magnetic Resonance Imaging Residual System Distortions and Patient-Induced Susceptibility Distortions on Radiation Therapy Treatment Planning for Prostate Cancer

International Journal of Radiation Oncology*Biology*Physics 100 (2): 317–24. Adjeiwaah, Mary, Mikael Bylund, Josef A. Lundman, Camilla Thellenberg Karlsson, Joakim H. Jonsson, and Tufve Nyholm. 2018.

Evaluation of Two Commercial CT Metal Artifact Reduction Algorithms for Use in Proton Radiotherapy Treatment Planning in the Head and Neck Area

Medical Physics 45 (10): 4329–44. Andersson, Karin M., Christina Vallhagen Dahlgren, Johan Reizenstein, Yang Cao, Anders Ahnesjö, and Per Thunberg. 2018.

Inter-Fraction Movements of the Prostate and Pelvic Lymph Nodes during IGRT

Journal of Radiation Oncology 7 (4): 357–66. Björeland, Ulrika, Joakim Jonsson, Magnus Alm, Lars Beckman, Tufve Nyholm, and Camilla Thellenberg-Karlsson. 2018.

Technical Note: Adapting a GE SIGNA PET/MR Scanner for Radiotherapy

Medical Physics 45 (8): 3546–50. Brynolfsson, Patrik, Jan Axelsson, August Holmberg, Joakim H. Jonsson, David Goldhaber, Yiqiang Jian, Fredrik Illerstam, Mathias Engström, Björn Zackrisson, and Tufve Nyholm. 2018.

Dynamic Contrast-Enhanced Magnetic Resonance Imaging May Act as a Biomarker for Vascular Damage in Normal Appearing Brain Tissue after Radiotherapy in Patients with Glioblastoma.

Acta Radiologica Open 7 (11): 205846011880881. Fahlström, Markus, Samuel Fransson, Erik Blomquist, Tufve Nyholm, and Elna-Marie Larsson. 2018.

Density estimation of grey-level co-occurrence matrices for image texture analysis

Physics in Medicine & Biology 63 (19). Garpebring, A. Patrik Brynolfsson, Peter Kuess, Dietmar Georg, Thomas H. Helbich, Tufve Nyholm, Tommy Löfstedt. 2018


Zero TE-Based Pseudo-CT Image Conversion in the Head and Its Application in PET/MR Attenuation Correction and MR-Guided Radiation Therapy Planning.

Magnetic Resonance in Medicine 80 (4): 1440–51. Wiesinger, Florian, Mikael Bylund, Jaewon Yang, Sandeep Kaushik, Dattesh Shanbhag, Sangtae Ahn, Joakim H. Jonsson, et al. 2018.


Impact of hybrid PET/MR technology on multiparametric imaging and treatment response assessment of cervix cancer

Radiotherapy and Oncology 125: 420-425. Daniel, M. Piotr Andrzejewski, Alina Sturdza, Katerina Majercakova, Pascal Baltzer, Katja Pinker, Wolfgang Wadsak, Markus Mitterhauser, Richard Pötter, Petra Georg, Thomas Helbich, Dietmar Georg. 2017.


MR-OPERA: A Multicenter/Multivendor Validation of Magnetic Resonance Imaging–Only Prostate Treatment Planning Using Synthetic Computed Tomography Images.

International Journal of Radiation Oncology Biology Physics 99 (3). Persson, E., C. Gustafsson, F. Nordström, M. Sohlin, A. Gunnlaugsson, K. Petruson, N. Rintelä, et al. 2017.